NEXTflex™ Rapid Directional RNA-Seq Kits

文献支持NEXTflex™ Rapid Directional RNA-Seq Kits

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品牌:瑞孚迪 Revvity 品牌认证

货号:NOVA-5138-07

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库存 :8 Rxns、48 Rxns

英文名 :NEXTflex™ Rapid Directional RNA-Seq Kit

保质期 :>1年

供应商 :蓝景科信

保存条件 :-20℃/2~8℃

NEXTflex™ Rapid Directional RNA-Seq Kit 为mRNA 或去除rRNA 总RNA的单端、双端和多重链特异性文库构建提供一个简单、灵活的解决方案。这个试剂盒可以用于获取RNA转录中DNA模板链的信息,准确率大于99%。与普通转录组测序相比,它更能准确地统计转录本的数量和确定基因的结构,同时可以发现更多的反义转录本,目前被广泛地应用于研究基因结构和基因表达调控等领域范围,并能够减少每个样本的测序费用。

NEXTflex™ Rapid Directional mRNA-Seq Kit 套装

为了简化mRNA 测序,PerkinElmer公司现在提供一个套装,包括NEXTflex Rapid Directional RNA-Seq library 建库试剂,NEXTflex RNA-Seq Barcodes 和NEXTflex Poly(A) Beads 。这个试剂盒有两个不同的版。每个试剂盒包含48次的NEXTflex Rapid Directional RNA-Seq Kit,NEXTflex Poly(A) Beads (48 rxns )和24种独立NEXTflex RNA-Seq Barcodes。

 

产品特点:

  • 快速的建库流程,节省人工操作时间
  • 合理化的实验方案,减少样本损失
  • 基于dUTP的方法
  • 提供精确的mRNA 链定向测量(>99%)
  • 稳定的、可靠的实验流程
  • 起始量1-100 ng mRNA或者去除rRNA 的总RNA
  • 多达96种barcodes 运用于多重测序
  • 匹配PE Sciclone的NGS和NGSx自动化建库系统
  • 经Illumina 测序平台验证
  • 可用于单端或者双端转录组测序

 

多重测序

NEXTflex Rapid Directional RNA-Seq Kit与NEXTflex™ RNA-Seq Barcodes 或者NEXTflex-96™ RNA-Seq Barcodes一起用于多重测序。这个多达96种独立接头的高通量试剂盒适用于Illumina RNA 测序平台。

 

产品列表:
 

货号 产品名称 规格
NOVA-5138-07

NEXTflex™ Rapid Directional RNA-Seq Kit

8 RXNS
NOVA-5138-08

NEXTflex™ Rapid Directional RNA-Seq Kit

48 RXNS
NOVA-5138-10

NEXTflex™ W/ RNA-SEQ BARCODES 1 - 24 & POLY(A) BEADS

48 RXNS
NOVA-5138-11 NEXTflex™ W/ RNA-SEQ BARCODES 25 - 48 & POLY(A) BEADS 48 RXNS

 

Figure 1.与竞争者N 文库产量的比较

1) 插入片段范围为200-400bp(Agilent Bioanalyzer)(Figure 5A)

2) Figure 1B 代表Comp N的文库量,Figure 5C 代表NEXTflex 1:5 稀释的文库量,NEXTflex的文库浓度是Competitor N的四倍

 

rRNA and Other Non-Coding RNA

Figure 2. rRNA Mapping

RNA建库过程有少量的rRNA污染,但是NEXTflex Rapid Directional RNA-Seq Kit与Competitor N’s kit相比,rRNA 的读取率低,文库量高,有用的测序reads所占比例高

 

Read Mapping

Table 1. Unique Mapping Rate and Number of Unique Reads.
 

Kit Name Unique Mapped

Unique Mapped Reads

 (millions)

NEXTflex™ Rapid Directional RNA-Seq Kit 53.49% ± 1.16%  1.604 ± 35
Competitor N Directional RNA-Seq Kit 44.08% ± 3.95% 1.321 ± 118

 

Figure 3. Reads Mapping Metrics

NEXTflex Rapid Directional RNA-Seq Kit比较结果:

1) 更高的唯一mapped reads百分比

2) 较低的重复率

3) 检测出更多的转录本

 

KIT CONTENTS

  • NEXTFLEX® RNA Fragmentation Buffer
  • NEXTFLEX® First Strand Synthesis Primer
  • NEXTFLEX® Directional First Strand Synthesis Buffer Mix
  • NEXTFLEX® Rapid Reverse Transcriptase
  • NEXTFLEX® Directional Second Strand Synthesis Mix
  • NEXTFLEX® Adenylation Mix
  • NEXTFLEX® Ligation Mix
  • NEXTFLEX® RNA-Seq Barcode Adapter 1 (0.6 µM)
  • NEXTFLEX® Uracil DNA Glycosylase
  • NEXTFLEX® Primer Mix (12.5 µM)
  • NEXTFLEX® PCR Master Mix
  • Nuclease-free Water
  • Resuspension Buffer

REQUIRED  MATERIALS NOT PROVIDED

  • 10 ng – 1 µg total RNA for enrichment by NEXTFLEX® Poly(A) Beads 2.0 or ~ 1 ng – 100 ng isolated mRNA or rRNA-depleted RNA
  • DynaMag™-2 Magnet (Life Technologies Cat # 123-21D)
  • Commercial kits for rRNA depletion (optional, if not using poly(A) enrichment)
  • 100% Ethanol (stored at room temperature)
  • 80% Ethanol ( freshly prepared )
  • 2, 10, 20, 200 and 1000 µL pipettes
  • RNase-free pipette tips
  • Nuclease-free 1.5 mL microcentrifuge tubes
  • Thin wall nuclease-free 0.5 mL microcentrifuge tubes
  • 96 well PCR Plate Non-skirted (Phenix Research, Cat # MPS-499) / or / similar
  • Adhesive PCR Plate Seal (BioRad, Cat # MSB1001)
  • Agencourt AMPure XP 60 mL (Beckman Coulter Genomics, Cat # A63881)
  • Magnetic Stand -96 (Ambion, Cat # AM10027) / or / similar for post PCR cleanup
  • Microcentrifuge
  • Thermocycler
  • Heat block
  • Vortex

 

 

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